Astronomy | |||
A Fast Template Periodogram for Finding Periodic (Non-Sinusoidal) Waveforms in Noisy, Irregularly-Sampled Time Series Data [More Info] John Hoffman, Princeton University | |||
ChiantiPy: a Python Package for Astrophysical Spectroscopy [More Info] Will Barnes, Graduate Student, Department of Physics and Astronomy, Rice University Kenneth Dere, Research Professor, College of Science, George Mason University | |||
Stingray : A Library of Time Series Methods for Astronomical X-Ray Data [More Info] Himanshu Mishra, IIT KGP, India Daniela Huppenkothen, NYU, USA Usman Khan, NUST, Pakistan | |||
Vizic: A Jupyter-Based Interactive Visualization Tool for Astronomical Catalogs [More Info] Weixiang Yu | |||
Biology, Biophysics and Biostatistics | |||
LabbookDB [More Info] Horea-Ioan Ioanas, Institute for Biomedical Engineering, ETH and University of Zurich | |||
Predicting Phenotype from Genotype with Machine Learning [More Info] Patricia Francis-Lyon, University of San Francisco Shraddha Lanka, University of San Francisco Lakshmi Navin Arbatti, University of San Francisco Gaurika Tyagi, University of San Francisco Hung Do, University of San Francisco | |||
PyGBe: Python, GPUs and Boundary Elements for Biomolecular Electrostatics [More Info] Natalia Clementi, George Washington University Gilbert Forsyth, George Washington University Lorena Barba, George Washington University | |||
Rambutan: A Python Package for Predicting 3D Genome Architecture [More Info] Jacob Schreiber, University of Washington | |||
Computational Science and Numerical Techniques | |||
Optimised Finite Difference Computation from Symbolic Equations [More Info] Michael Lange, Imperial College London, UK Navjot Kukreja, Imperial College London, UK Fabio Luporini, Imperial College London, UK Mathias Louboutin, The University of British Columbia, Canada Gerard Gorman, Imperial College London, UK | |||
Sarkas: A Fast Pure-Python Molecular Dynamics Code [More Info] Gautham Dharuman, Michigan State University Michael S. Murillo, Michigan State University Yongjun Choi, Michigan State University | |||
Systematic Application of PySPH to Bubble Dynamics [More Info] Erin Arai, Boston University | |||
Data Science | |||
Big Data Processing with Apache Beam Python [More Info] Robert Bradshaw | |||
Deploying Interactive Jupyter Dashboards for Visualizing Hundreds of Millions of Datapoints, in 30 Lines of Python [More Info] Philipp Rudiger, Continuum Analytics Inc. James A. Bednar, Continuum Analytics Jean-Luc Stevens, Continuum Analytics | |||
Distributed Convex Optimization for GLMs [More Info] Chris White, Capital One Hussain Sultan, AQN Strategies | |||
HDF Data Services [More Info] John Readey | |||
Hunting for Emerging Trends in Music Using Bayesian Inference [More Info] Alex Companioni | |||
pomegranate: Fast and Flexible Probabilistic Modeling in Python [More Info] Jacob Schreiber, University of Washington | |||
Reskit — A Library for Creating and Curating Reproducible Pipelines for Scientific Machine Learning [More Info] Dmitry Petrov Alexander Ivanov Daniel Moyer | |||
SciSheets: Providing the Power of Programming with the Simplicity of Spreadsheets [More Info] Joseph Hellerstein, University of Washington Alicia Clark, University of Washington | |||
Using Mystic to Accelerate Data Science [More Info] Michael McKerns, UQ Foundation | |||
Earth, Ocean and Geo Science | |||
Bringing the Generic Mapping Tools to Python [More Info] Leonardo Uieda, Department of Geology and Geophysics, University of Hawaii at Manoa, USA, Faculdade de Geologia, Uni Paul Wessel, Department of Geology and Geophysics, University of Hawaii at Manoa, USA | |||
Deep Learning with Geospatial Data [More Info] Shane Grigsby, Cooperative Institute for Research in Environmental Sciences (CIRES) | |||
From the Field to Geostationary Orbit: Mapping Lightning with Python [More Info] Eric Bruning, Texas Tech University | |||
Global 5 Meter Resolution Time Series Mosaics [More Info] Amit Kapadia, Planet | |||
Interactive Geophysics [More Info] Lindsey Heagy, University of British Columbia Rowan Cockett | |||
MetPy’s Choice of Unit Support: A Descent into Madness [More Info] Ryan May, Unidata John Leeman | |||
Pygridtools: A Collaboration Academia, Open Source, and the Private Sector [More Info] Paul Hobson, Geosyntec Consultants | |||
Using Python to Process and Visualize Real-Time Atmospheric Data During VORTEX-SE [More Info] Abby Kenyon, Texas Tech University Aaron Hill, Texas Tech University | |||
WARNO: Multi-platform Monitoring Framework for Remote Sensing Instrumentation. [More Info] Joseph Hardin, Pacific Northwest National Laboratory | |||
General | |||
Berryconda : Scientific Python on the Raspberry Pi [More Info] Jonathan Helmus | |||
bqplot - Seamless Interactive Visualizations in the Jupyter Notebook [More Info] Dhruv Madeka, Senior Machine Learning Scientist, Amazon | |||
Dataflow Notebooks: Encoding and Using Cell Dependencies [More Info] David Koop, University of Massachusetts, Dartmouth | |||
Efficient Array Computing in C++ with xtensor and Apache Arrow [More Info] Johan Mabille, QuantStack Sylvain Corlay, QuantStack | |||
Make Your Observational Study an Experiment [More Info] Peter Skipper, Data Scientist, Research & Development, Civis Analytics | |||
MatchPy: A Pattern Matching Library [More Info] Manuel Krebber, RWTH Aachen University | |||
nbgrader: A Tool for Creating and Grading Assignments in the Jupyter Notebook [More Info] Jessica Hamrick, University of California, Berkeley Matthias Bussonnier, IPython/Jupyter, University of California, Berkeley Jonathan Frederic Brian Granger, Cal Poly State University, Project Jupyter Logan Page Min Ragan-Kelley, IPython/Jupyter Carol Willing | |||
Python + Tableau: Building an Interactive and Beautiful Data Visualization with TabPy [More Info] Chloe Tseng, Twitter | |||
Robust Color Matching of Geospatial Data: An Alternative to Histogram Matching [More Info] Joe Kington | |||
Scientific MicroPython on Microcontrollers and IoT [More Info] Roberto Colistete Jr, Federal University of Espirito Santo, Brazil | |||
The Demeshening: The Next Generation of Particle Support in yt [More Info] Nathan Goldbaum, University of Illinois Meagan Lang, University of Illinois | |||
Machine Learning and AI | |||
A Python API for Earth [More Info] Sam Skillman, Descartes Labs | |||
Adjusting Estimation Bias from Link-Tracing Sampling in Social Networks [More Info] Wendy Wei | |||
Calculating Radiation Doses for Tumor Treatment with Learning Algorithms [More Info] Roy Keyes, Arundo Analytics | |||
Efficient Image Search and Identification: The Making of Wine-O.AI [More Info] Michelle Gill, Metis | |||
Fully Convolutional Networks for Image Segmentation [More Info] Daniil Pakhomov, Johns Hopkins University | |||
hybrid-vocal-classifier (HVC): a Python Package to Automate Labeling of Birdsong for Behavioral Experiments [More Info] David Nicholson, Emory University | |||
Learning in Cycles: Implementing Sustainable Machine Learning Models in Production [More Info] Andrew Therriault, City of Boston | |||
NEXT: Machine Learning, Crowdsourcing, and Cartoons [More Info] Scott Sievert, University of Wisconsin–Madison | |||
Materials Science and Engineering | |||
Designing a Python-based Monte Carlo Tool for Generating Non-Equilibrium Semi-Crystalline Polymer Configurations [More Info] Tyler Martin | |||
Materials Project - A Prime Case of Software Engineering in Materials Sciences [More Info] Patrick Huck | |||
Quantifying Plastic Deformation using Machine Learning [More Info] Michail Tzimas, West Virginia University | |||
The OOF Finite Element Tool for Materials Science [More Info] Andrew Reid, NIST | |||
Tomviz: A Platform for Reproducible Materials Tomography [More Info] Marcus Hanwell, Kitware | |||
Neuroscience | |||
MNE-Python to See the Brain at a Millisecond Time-Scale [More Info] Alexandre Gramfort, INRIA Author: Eric Larson, University of Washington Author: Denis Engemann, INRIA Author: Jaakko Leppäkangas, Telecom ParisTech, Université Paris-Saclay Author: Mainak Jas, Telecom ParisTech, Université Paris-Saclay Author: Christian Brodbeck, New York University Author: Teon B Brooks, Stanford University Author: Jean-Rémi King, New York University Author: Chris Holdgraf, University of California, Berkeley Author: Marijn van Vliet, Aalto University Author: Matti Hamalainen, Massachusetts General Hospital, Harvard University | |||
pulse2percept: A Python-based Simulation Framework for Bionic Vision [More Info] Michael Beyeler, Department of Psychology, University of Washington, Institute for Neuroengineering (UWIN) Ariel Rokem, eScience Institute, University of Washington Geoffrey M. Boynton, Department of Psychology, University of Washington Ione Fine, Department of Psychology, University of Washington | |||
PyHRF: A Python Library for the Analysis of fMRI Data Based on the Study of Hemodynamics [More Info] Jaime Arias, Inria Grenoble Rhône-Alpes Philippe Ciuciu Michel Dojat Florence Forbes Aina Frau-Pascual Thomas Perret Jan Warnking | |||
Open Data and Reproducibility | |||
Creating Reproducible Experiments with ReproZip [More Info] Vicky Steeves, New York University Fernando Chirigati, New York University Rémi Rampin, New York University | |||
Introducing JOSS: The Journal of Open Source Software [More Info] Kyle Niemeyer, Oregon State University Arfon Smith Lorena Barba, George Washington University George Githinji Melissa Gymrek Kathryn Huff, University of Illinois at Urbana-Champaign Daniel Katz Christopher Madan Abigail Cabunoc Mayes Kevin Moerman Pjotr Prins Karthik Ram Ariel Rokem Tracy Teal, Data Carpentry Jake Vanderplas | |||
Sacred: How I Learned to Stop Worrying and Love the Research [More Info] Klaus Greff, IDSIA, USI, SUPSI | |||
SciPy Tools | |||
Composable Multiprocessing and Multithreading for Numeric Libraries [More Info] Anton Malakhov, Intel Corporation Anton Gorshkov, Intel Corporation Terry Wilmarth | |||
Dash - A New Framework for Building User Interfaces for Technical Computing [More Info] Chris Parmer | |||
Dask: Advanced Techniques [More Info] Matthew Rocklin, Continuum Analytics | |||
Diversity & Inclusion at the SciPy Conference [More Info] Julie Hollek, Twitter | |||
Make it Work, Make it Right, Make it Fast - Debugging and Profiling in Dask [More Info] James Crist, Continuum Analytics | |||
Scientific Analysis at Scale: a Comparison of Five Systems [More Info] Jake VanderPlas, UW eScience Institute | |||
Terabytes at Your Fingertips: Interactive Big Data Coding with PySpark [More Info] Sam Penrose | |||
The Spyder Ecosystem of Plugins [More Info] Carlos Cordoba |
Posters | |||
A New Approach of Combining Time-Series Forecasts Using Scipy and SKLearn [More Info] Eugene Chen, Adobe Systems | |||
Hunting for Astrophysical Point Sources with Python [More Info] Siddharth Mishra Sharma | |||
noWorkflow: Collecting, Managing, and Analyzing Provenance from Python Scripts [More Info] Joao Felipe Nicolaci Pimentel Juliana Freire Vanessa Braganholo Leonardo Murta | |||
Python Data Processing System for Exploring Optical Properties of Materials with T-Rays [More Info] Alexander Mamrashev, Institute of Automation & Electrometry SB RAS Lev Maximov, Insitute of Automation & Electrometry SB RAS Alexey Nazarov | |||
3D Magnetic Modelling of Ellipsoidal Bodies [More Info] Diego Tomazella | |||
Accuracy and Numerical Precision of Discrete Probability Distributions: A Comparison of SciPy, R, and a Numba/Cephes-Based Implementation. [More Info] Elliot Hallmark, Asuragen Inc | |||
An Overview of Bayesian Network Structure Learning [More Info] Jacob Schreiber, University of Washington | |||
Automatic Small Angle Scattering Anisotropic Data Reduction [More Info] Ricardo Ferraz Leal, ORNL | |||
Bayesian Tools for Observational Cosmology of Type Ia Supernovae using PyCUDA [More Info] Roberto Colistete Jr | |||
BespON: Extensible Config Files with Multiline Strings, Lossless Round-Tripping, and Hex Floats [More Info] Geoffrey Poore, Associate Professor of Physics, Union University | |||
Building a Monitoring Dashboard for In-Situ Space Weather Ion and Electron Spectrometers [More Info] Daniel da Silva | |||
Building Better Radar Data, Block by Open Source Block [More Info] Scott Collis, Argonne National Laboratory, The University of Chicago | |||
Canvas-Style Interaction with Python: A D3 Interface to Phcpy in Jupyter [More Info] Jasmine Otto, University of Illinois at Chicago | |||
Challenges of Numerical Analysis in Near-IR Echellogram Data Reduction [More Info] Andrew Colson | |||
Competition and Bank Fragility [More Info] Blake Marsh, Federal Reserve Bank of Kansas City | |||
Creating a Python Cocoon around Legacy C Code [More Info] Molly Hardman Mary J. Brodzik Kevin Beam | |||
Defining Features of mRNAs Regulated by Oncogenic eIF4E: A Pan-Survey Study Utilizing Predictive Technology to Define the Translational Landscape of eIF4E in Cancer. [More Info] Amanda Ernlund | |||
Easy Steps for Accelerating Scientific Python [More Info] Robert Cohn, Intel Corporation Anton Malakhov, Intel Corporation | |||
FigureFirst: A Layout Tool for Itterative Scientific Figure Construction [More Info] Theodore Lindsay Peter Weir Floris Van Breugel | |||
Interactive HPC Gateways with Jupyter and Jupyterhub [More Info] Michael Milligan, Minnesota Supercomputing Institute, University of Minnesota | |||
Jupyter Notebooks for Neutron Radiography Data Processing Analysis [More Info] Jean Bilheux, Oak Ridge National Laboratory | |||
Keep it Sympl: Representing Clouds and Turbulence with CHOMP [More Info] Jeremy McGibbon, University of Washington Author: Christopher S. Bretherton, University of Washington | |||
Looking for a Challenge? Lessons in Running International Grand Challenges [More Info] Brian Helba | |||
Maintaining the Psi4 Ecosystem: Adventures in Building and Distribution [More Info] Lori Burns | |||
Meteorologists and their CAPEs [More Info] John Leeman, Unidata Ryan May, Unidata | |||
Network Analysis on Twitter #Gamergate 2+ Years Later [More Info] Emily Chao | |||
NeuroLachesis: A Neuromorphic Framework [More Info] Georgios Detorakis, Department of Cognitive Sciences, UC Irvine Dan Barsever, Department of Cognitive Sciences, UC Irvine Emre Neftci, Department of Cognitive Sciences, UC Irvine | |||
Parallel Analysis in MDAnalysis Using the Dask Parallel Computing Library [More Info] Author: Mahzad Khoshlessan, Arizona State University Author: Oliver Beckstein, Arizona State University Author: Shantenu Jha, Rutgers University Author: Ioannis Paraskevakos, Rutgers University | |||
Pescador: A Stream Manager for Iterative Learning [More Info] Brian McFee | |||
pyMolDyn: Identification, Structure, and Properties of Cavities/Vacancies in Condensed Matter and Molecules [More Info] Ingo Heimbach | |||
PySeqArray: Data Manipulation of Whole-Genome Sequencing Variants in Python [More Info] Xiuwen Zheng, University of Washington | |||
Python Implementation of Item Response Theory Calculations for Fitting Logistic Models [More Info] David Mashburn, Pluralsight, LLC | |||
Python Meets Systems Neuroscience: Affordable, Scalable and Open-Source Electrophysiology in Awake, Behaving Rodents. [More Info] Narendra Mukherjee, Brandeis University | |||
Scikit-beam: Python Data Analysis Library for X-ray, Neutron and Electron Data. [More Info] Sameera Abeykoon, Brookhaven National Laboratory Author: Thomas Caswell, Brookhaven National Laboratory Author: Daniel Allan, Brookhaven National Lab Author: Arman Akilic, National Synchroton Light Source-II, BNL Author: Staurt Campbell, National Synchrotron Light Source-II, BNL Author: Kirstein van Dam, Computational Science Initiative, BNL Author: Li Li, National Synchrotron Light Source-II, BNL | |||
Secrets of Accelerating Scientific Python [More Info] Anton Malakhov, Intel Corporation Oleksandr Pavlyk, Intel Corporation Denis Nagorny, Intel Corporation | |||
Software Transactional Memory in Pure Python [More Info] Dillon Niederhut, Enthought | |||
SPORCO: A Python Package for Standard and Convolutional Sparse Representations [More Info] Brendt Wohlberg | |||
Storm Cell Tracking in Python [More Info] Mark Picel, Argonne National Laboratory | |||
Synthpy: A Synthetic Data Generation Library Built on the Python Scientific Computing Stack [More Info] Pamela Wu, New York University David Fenyo | |||
The Intersection of Data Science, Machine Learning and Structural Engineering [More Info] David Najera | |||
Unified Approach for Constructing Optimization Strategies Based on Python Linear Algebra Modules [More Info] Nadia Udler | |||
Using Matplotlib and IPython In Neutron Scattering Experiment Data Reduction Software [More Info] Wenduo Zhou, Oak Ridge National Laboratory | |||
Using Python to Generate 3D Wind Fields from Doppler Radars [More Info] Robert Jackson, Argonne National Laboratory |